FastQCFastQC Report
Wed 8 May 2024
EGAF00007966647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486226
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10680.21965094421112819No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10190.2095733259842131No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7620.15671724671243414No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5630.11578977677047299No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5370.11044246913986501No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5290.10879714371506255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)