FastQCFastQC Report
Wed 8 May 2024
EGAF00007966648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486226
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24010.49380329311883775No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12550.25811042601588563No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11080.22787757133514047No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8400.1727591696042581No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5840.12010875601057944No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5680.11681810516097453No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5400.11105946617416593No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5320.10941414074936347No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5290.10879714371506255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)