FastQCFastQC Report
Wed 8 May 2024
EGAF00007966650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473694
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11830.2497392831659257No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9550.20160694456759004No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC8810.18598504519795478No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7280.15368571271749273No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5770.12180859373350729No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5670.11969752625112413No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5460.11526428453811956No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5280.11146436306982989No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4820.10175345265086744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)