FastQCFastQC Report
Wed 8 May 2024
EGAF00007966651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440006
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12650.28749607959891454No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11700.2659054649254783No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9960.2263605496288687No Hit
ACCGCCCAGACAAGCCAGAGCCACCAGGTGATCGTTGGTCAGTG9450.21476979859365555No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT7920.17999754548801608No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7760.17636123143775312No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7670.17431580478448022No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7630.17340672627191447No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7230.1643159411462571No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7020.15954327895528697No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6540.1486343368044981No Hit
CAGGCAAGCCAGAGCTACCAGGTGGTCGTTGGTCAGTGCGGCCA5440.12363467770894034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)