FastQCFastQC Report
Wed 8 May 2024
EGAF00007966652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440006
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21590.4906751271573569No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12740.28954150625218744No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11790.2679508915787512No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9920.22545147111630295No Hit
TGCCAGGCACACGGCCTGACCCCACAGCAGG9650.21931519115648423No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8590.1952246105734922No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8080.18363385953827902No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG8020.1822702417694304No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7920.17999754548801608No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7440.16908860333722722No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7410.1684067944528029No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC7220.16408867151811565No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6530.14840706717635668No Hit
CCGGTGCTGTGTCAGGACCACGGTCTGACCC5540.12590737399035468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)