FastQCFastQC Report
Wed 8 May 2024
EGAF00007966653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464847
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23060.49607720389719623No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18600.40013165622236996No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12260.2637426938325944No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11110.2390033710016414No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10230.22007241092230345No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9820.21125230452170282No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9010.1938272162668577No Hit
GGCTTCGGTGCGCGGACCCAGGTTGTGACGAAAGCGCATGTTGC8080.1738206334557392No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7940.1708088898067536No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7870.16930301798226083No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7510.16155853431344078No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7300.1570409188399624No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7250.15596529610818186No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7030.15123255608834735No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6910.148651061532074No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6390.13746458512155613No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG6360.1368192114824878No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG5940.12778398053553106No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5760.123911738701121No Hit
GTAACCATCTTCGGTGTCACGCGGATCACCGAAGTTAACCTGAA5700.12262099142298433No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5570.11982437232035488No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5450.11724287776408152No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5140.11057401682704202No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5010.10777739772441254No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4980.10713202408534422No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4760.10239928406550972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)