FastQCFastQC Report
Wed 8 May 2024
EGAF00007966654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464847
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63841.3733551039374245No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23790.5117812957811926No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23580.5072636803077142No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13710.29493575305423075No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13350.2871912693854107No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10740.23104376278646524No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10700.23018326460104077No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9870.21232792725348343No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9240.1987750808330483No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8970.19296671808143323No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8410.18091974348549092No Hit
TCTGACGAACGCGGCCCGATCGTTAAAGCAC8380.1802743698464226No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7890.16973326707497305No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7770.1671517725186997No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7670.16500052705513857No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7500.16134340976708467No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7410.15940728884987965No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7350.15811654157174296No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7170.15424429973733292No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6560.14112170240961006No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6200.13337721874078998No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5970.12842935417459939No Hit
CTGAAGGCGGTAAGCTCCAACCTGGACCTGT5880.12649323325739437No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5830.12541761052561382No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5700.12262099142298433No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5470.11767312685679375No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5460.11745800231043763No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5020.10799252227076865No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4760.10239928406550972No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4740.10196903497279751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)