FastQCFastQC Report
Wed 8 May 2024
EGAF00007966656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504897
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31580.6254741065999601No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG13410.2655987260768038No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11660.2309381913538801No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG9970.19746601782145665No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8050.15943845972544896No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7910.15666561694761505No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7460.14775290801886326No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7300.14458394484419596No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6920.1370576573043611No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6000.11883611905002406No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5530.10952728972443884No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5170.10239712258143739No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)