FastQCFastQC Report
Wed 8 May 2024
EGAF00007966658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476389
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67181.4101920909172967No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54111.1358364697757506No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19660.41268795039348094No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16790.35244306648558216No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12050.25294454741818134No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11810.24790664771856616No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11750.24664717279366233No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11100.23300286110720442No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10630.22313697419545794No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10620.22292706170797394No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10340.21704951205842285No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT10050.21096204992138776No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9610.20172590047209318No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9400.19731773823492985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8970.18829150127311925No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8960.18808158878563527No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8560.17968508928627655No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8310.17443727709917736No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8290.1740174521242094No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8200.1721282397368537No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8080.1696092898870461No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7290.15302620337581263No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7050.1479883036761974No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6770.14211075402664627No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6640.1393818916893547No Hit
GACGCCGCGTCTTCTTCTTCCGCGGGTCAGT6600.13854224173941884No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6300.1322448671148998No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5980.1255276675154128No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5810.12195915522818536No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5450.11440230567876253No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5290.11104370587901903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)