FastQCFastQC Report
Wed 8 May 2024
EGAF00007966660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484920
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37460.7724985564629216No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29140.6009238637300999No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21290.43904149138002146No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20330.4192444114493112No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13460.2775715581951662No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA13240.2730347273777118No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9590.19776457972449066No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8510.17549286480244164No Hit
ACCCGTGAAAACGATGGCAAACCACGTCGCA8380.1728120102284913No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7620.15713932195001237No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7440.15342736946300423No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7070.1457972449063763No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6860.14146663367153345No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5820.12001979707993071No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA5380.11094613544502187No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5330.10991503753196404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)