FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007967380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007967380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138263762
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT3060400.2213450549681991No Hit
CCCCCATCGCATCATACGACGGTGCAGGAATATTAACCTGCTTCCCATCA2640090.19094591104789987No Hit
GTTGATTTCTGTTCCTGCAGCTACTTAGATGTTTCAGTTCACTGCGTTCG2585640.1870077858868038No Hit
CCCCATTCGGACATCTGCGGATCAAAGCTTGTTTGCCAGCTCCCCGCAGC2444580.17680554648874663No Hit
CCGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCC2313710.1673403042512325No Hit
CCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTTGGA2140280.15479688741580747No Hit
GTCCCGCCCTACTTGTCGTACACCTAGTTCCACAATACTGTTTTCGCATA2080470.1504710974087339No Hit
CTTGGTTTCGGGTCTACACCCAGCGACTGAACGCCCTATTCGGACTCGCT2023570.14635577469677125No Hit
GTCAGCATTCGCACTTCTGATACCTCCAGCATCCTTTACAAGACACCTTC2021690.14621980269855525No Hit
CTCTGACACACTCTAGCCGTGCAGTCACCAATGCAATTCCCAGGTTAAGC2017190.14589433780920846No Hit
CCCCATCGCATCATACGACGGTGCAGGAATATTAACCTGCTTCCCATCAG1950040.1410376784048448No Hit
CCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTG1895360.13708291837162653No Hit
CTCGGTTGATTTCTGTTCCTGCAGCTACTTAGATGTTTCAGTTCACTGCG1886090.13641246069957216No Hit
GCCATGGATAGATCACTTGGTTTCGGGTCTACACCCAGCGACTGAACGCC1867200.13504623141962535No Hit
CCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTT1677670.12133837353564848No Hit
CCCACTTCGTTTCCCACTTAGCCATATTTAGGGACCTTAGCTGGCGGTCT1676370.12124435034539276No Hit
CCCCACTTTCACCCTCAGGTCGTATGCGGTATTAGCTAATCTTTCGACTA1673800.12105847373081025No Hit
GCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGG1656900.11983617225748565No Hit
GCACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTT1642960.1188279543558203No Hit
CTCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAGCCATATTTA1638290.11849019412620929No Hit
CACCATTTTATTGCAACCCCTTCATCCTTCTGGCGCGAGCCAGTCAAACT1578180.11414270645984594No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1518610.10983427458020419No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1457640.10542458695721009No Hit
CTCCTACCATGCACTTACGTGCATCCGCAGCTTCGGTATATGGCTTAGCC1437330.10395565542329162No Hit
CCCACTTTCACCCTCAGGTCGTATGCGGTATTAGCTAATCTTTCGACTAG1425900.10312897460435078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)