FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007967528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007967528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99585040
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT1757980.17653053109181863No Hit
CCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTT1423740.14296725692935405No Hit
CCGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCC1315630.13211120867150328No Hit
CCCCCATCGCATCATACGACGGTGCAGGAATATTAACCTGCTTCCCATCA1272840.12781437854521122No Hit
GTCCCGCCCTACTTGTCGTACACCTAGTTCCACAATACTGTTTTCGCATA1259540.1264788365802735No Hit
CCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTG1207320.12123507707583388No Hit
CCCCATCGCATCATACGACGGTGCAGGAATATTAACCTGCTTCCCATCAG1169990.11748652207198994No Hit
GCACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTT1158840.1163668759886023No Hit
GCCATGGATAGATCACTTGGTTTCGGGTCTACACCCAGCGACTGAACGCC1118100.11227590007495102No Hit
CTCTGACACACTCTAGCCGTGCAGTCACCAATGCAATTCCCAGGTTAAGC1104720.11093232477488588No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG1049500.10538731520316705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)