FastQCFastQC Report
Wed 31 May 2023
EGAF00007967529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007967529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99585040
Sequences flagged as poor quality0
Sequence length50
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7078290.7107784462405197No Hit
GTTTGATCCTGGCTCAGATTGAACGCTGGCGGCATGCCTTACACATGCAA1802280.18097899041864118No Hit
AGCAAACTCCGAATACCGAAGAGTGCAATCACGGGAGACAGACATCGGGT1028760.10330467307137697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)