FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007967540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007967540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128132589
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1667460.13013551142715143No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1547520.12077489513616242No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1324230.10334841513270289No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)