FastQCFastQC Report
Wed 31 May 2023
EGAF00007967652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007967652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120020510
Sequences flagged as poor quality0
Sequence length50
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG2152460.17934101429830618No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1416160.11799316633465398No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1408000.1173132825381262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)