FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007967696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007967696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126398863
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1786470.14133592325114508No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1292530.10225804009012326No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1271870.10062353171642058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)