FastQCFastQC Report
Wed 31 May 2023
EGAF00007967708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007967708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105766970
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCC1452520.1373320990475571No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1413580.1336504203533485No Hit
GTTGATTTCTGTTCCTGCAGCTACTTAGATGTTTCAGTTCACTGCGTTCG1409470.1332618302292294No Hit
GTCAGCATTCGCACTTCTGATACCTCCAGCATCCTTTACAAGACACCTTC1123960.1062675805121391No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG1086610.10273623230390358No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT1085430.10262466628286696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)