FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007967709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007967709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105766970
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10965841.036792488240894No Hit
AGCAAACTCCGAATACCGAAGAGTGCAATCACGGGAGACAGACATCGGGT1696480.16039790115950187No Hit
GTTTGATCCTGGCTCAGATTGAACGCTGGCGGCATGCCTTACACATGCAA1359120.12850136484008193No Hit
GTGCATGTGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAG1223400.11566938147136105No Hit
GGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCA1197850.11325369347349176No Hit
AGTGCATGTGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTA1068600.10103343227096323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)