FastQCFastQC Report
Wed 31 May 2023
EGAF00007967841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007967841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences221216416
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22035140.9960897296157262No Hit
GTTTGATCCTGGCTCAGATTGAACGCTGGCGGCATGCCTTACACATGCAA14216350.6426444409984474No Hit
AGTGCATGTGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTA6074580.27459897008728323No Hit
GTGCATGTGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAG5932450.2681740400314595No Hit
GGAAAGTCCGGCCATAGTGGGTGATAGCCCCGTATGCGAAAACAGTATTG3943040.1782435531366714No Hit
AGCAAACTCCGAATACCGAAGAGTGCAATCACGGGAGACAGACATCGGGT3912020.17684130638840112No Hit
GTGAAATCCTGTCTGAAGATGGGGGGACCATCCTCCAAGGCTAAATACTC3742180.16916375681631152No Hit
CCTGGCTCAGATTGAACGCTGGCGGCATGCCTTACACATGCAAGTCGAAC3308520.1495603291936526No Hit
GTCTGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATCAGT2975140.13449001904090155No Hit
ATTGAACGCTGGCGGCATGCCTTACACATGCAAGTCGAACGGCAGCGGGG2732260.12351072535231743No Hit
CAGACATCGGGTGCTAACGTCCGGTGTCAAGAGGGAAACAACCCAGACCG2514730.1136773683197182No Hit
CTTGGCGATCACAGGCGATGAAGGACGTAGTAGCCTGCGAAAAGCTGCGG2393550.10819947467189776No Hit
GCATGTGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAGCC2351450.1062963609355284No Hit
GGCAAACAAGCTTTGATCCGCAGATGTCCGAATGGGGAAACCCGGCCCGT2320480.10489637441734884No Hit
GTGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAGCCTGCG2297540.1038593808517357No Hit
CCCGAAACCAAGTGATCTATCCATGGCCAGGTTGAAGGTGCGGTAACACG2273700.10278170314448998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)