FastQCFastQC Report
Wed 31 May 2023
EGAF00007967858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007967858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124228590
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG2103690.16934024607379025No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1801030.1449770942421547No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1432400.11530357061929142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)