FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007967868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007967868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129453341
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG2067240.15968996891320095No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1621710.125273707690557No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTACAGGAATCTCGTAT1527310.11798150501191003TruSeq Adapter, Index 4 (97% over 37bp)
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1503290.1161260102201611No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1400440.10818106270428356No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1300420.10045472677294594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)