FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007969560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007969560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36223999
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGGAA1190414732.862597528229834No Hit
TCACACTC1145901131.633754738122644No Hit
CAGTCTGG1031009428.46205356840916No Hit
GGCATACT15188944.193059965576965No Hit
ATTGGAAA727730.20089720077565154No Hit
CAGTCTGA687630.18982719163613052No Hit
TCACCCTC674700.18625773482381114No Hit
TCCCACTC565080.1559960290414098No Hit
TCACACTA491070.1355648226469971No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)