FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007969564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007969564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36984800
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGGAA1214342432.83355324349462No Hit
TCACACTC1169265631.614760658432655No Hit
CAGTCTGG1054493128.511526356773594No Hit
GGCATACT15113384.0863760247453005No Hit
ATTGGAAA732200.197973221431507No Hit
TCACCCTC691700.18702277692457442No Hit
CAGTCTGA690410.1866739849884277No Hit
TCCCACTC586710.15863543942376326No Hit
TCACACTA508720.13754839826090717No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)