FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007969568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007969568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35925741
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGGAA1172625232.64025089976572No Hit
TCACACTC1125673431.33333839933879No Hit
CAGTCTGG1019335528.3734022354612No Hit
GGCATACT14898164.146931861475036No Hit
TCACCCTC861140.23969999672379758No Hit
ATTGGAAA722220.20103134407165046No Hit
TCCCACTC710120.19766328549771597No Hit
CAGTCTGA674690.18780127597089785No Hit
TCACACTA545770.15191614280134125No Hit
CAGGCTGG365040.10160959519248329No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)