FastQCFastQC Report
Wed 31 May 2023
EGAF00007969576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007969576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2472697
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAATTT65508326.492651546064884No Hit
TTTCGCGA63021125.4867862904351No Hit
ACAGCAAC58465123.644263733081733No Hit
GAGTTGCG55492822.44221592859942No Hit
CGCAATTA45240.18295812224465835No Hit
TTTCGCGC31070.1256522736105556No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)