FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007969580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007969580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2569624
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAATTT68183926.53458249144622No Hit
TTTCGCGA65744825.585377471567828No Hit
ACAGCAAC61079323.76974218796213No Hit
GAGTTGCG57607622.418688492946828No Hit
CGCAATTA46600.1813494892637989No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)