FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007969582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007969582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2569624
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG241880.9413050313975897No Hit
CTGGGACACAGCTGAG55360.21544007994944006No Hit
TTCTATGACGCTTTGA48680.18944405874166806No Hit
CCAGAATACCAGTCCG46400.18057116527554226No Hit
GTAGGTGGATGGTCCG45960.17885885250137765No Hit
TTATCGACTTCATGCA44180.17193176900589346No Hit
TACATTGCTACACCTA43060.16757315467165623No Hit
ACCTCACACACGTGCC35430.13788009451966513No Hit
CTCGGATCTTCATTTC31060.12087371537625738No Hit
CGCTTGTACTGTGCTA30980.12056238578095473No Hit
ATCACGATGTTGCAGT29890.116320520044956No Hit
ACGGCTTCTGTACGTT26020.10125995087218986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)