FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007969584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007969584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2457617
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAATTT65118126.49643943706444No Hit
TTTCGCGA62833225.56671767814106No Hit
ACAGCAAC58159323.664916054861273No Hit
GAGTTGCG54980822.371590040270718No Hit
CGCAATTA45770.18623731850813205No Hit
TTTCGCGC27240.1108390770408896No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)