FastQCFastQC Report
Wed 31 May 2023
EGAF00007969586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007969586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2457617
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG218750.8900898716114025No Hit
CTGGGACACAGCTGAG53160.21630709748508412No Hit
TTCTATGACGCTTTGA47550.19348010694913No Hit
GTAGGTGGATGGTCCG46480.1891262959199908No Hit
CCAGAATACCAGTCCG45890.18672559638055888No Hit
TTATCGACTTCATGCA43250.1759834831871687No Hit
TACATTGCTACACCTA42720.17382692258395022No Hit
ACCTCACACACGTGCC33870.13781642949247178No Hit
CTCGGATCTTCATTTC31710.1290274277887889No Hit
CGCTTGTACTGTGCTA29540.12019773626240379No Hit
ATCACGATGTTGCAGT28100.11433840179328188No Hit
CCATTGCTGCTCACGG24670.10038179260641507No Hit
ACGGCTTCTGTACGTT24660.10034110278371285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)