FastQCFastQC Report
Wed 22 May 2024
EGAF00007971024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007971024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101477805
Total Bases15.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTACACATCTCGTAT3335660.3287083318367007TruSeq Adapter, Index 11 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTACACATCGCGTAT1269390.12509040770048188TruSeq Adapter, Index 11 (97% over 40bp)

[OK]Adapter Content

Adapter graph