FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007971026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007971026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103771294
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTACACATCTCGTAT4176060.402429211299996TruSeq Adapter, Index 11 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTACACATCGCGTAT1468280.14149192357570486TruSeq Adapter, Index 11 (97% over 40bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)