FastQCFastQC Report
Wed 31 May 2023
EGAF00007971052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007971052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences245677852
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGGTT9971420.405873786294745TruSeq Adapter, Index 23 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGTTT7292950.29685012062055965TruSeq Adapter, Index 23 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGTAT4671240.1901367975164485TruSeq Adapter, Index 23 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGGAT3310430.13474678213972663TruSeq Adapter, Index 23 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGGGT2537090.10326897517811252TruSeq Adapter, Index 23 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)