FastQCFastQC Report
Wed 31 May 2023
EGAF00007971054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007971054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences248813914
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGGTT10100110.40593027285443534TruSeq Adapter, Index 23 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGTTT8156670.3278221008170789TruSeq Adapter, Index 23 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGTAT5619550.2258535268248704TruSeq Adapter, Index 23 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGGAT3677880.14781649228828897TruSeq Adapter, Index 23 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)