FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007971056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007971056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences248131890
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGGTT9857280.3972596992671921TruSeq Adapter, Index 23 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGTTT7763250.3128678865098718TruSeq Adapter, Index 23 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGTAT5870110.23657217135612837TruSeq Adapter, Index 23 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCATTCGAATCTCGGAT3578280.14420879154227215TruSeq Adapter, Index 23 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)