FastQCFastQC Report
Sat 25 May 2024
EGAF00007971112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007971112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115818427
Total Bases17.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCGAGACATCTCGTAT11216240.9684331147063497TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCGAGACATCGCGTAT1634230.14110276251636536TruSeq Adapter, Index 11 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)