FastQCFastQC Report
Mon 22 May 2023
EGAF00007973362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007973362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48107154
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA1257278526.134959054114905No Hit
ACCAGTCC1240212925.780217636653376No Hit
CTTTCCTT1176669824.45935172136768No Hit
GGACAGGG1042642021.67332534366926No Hit
CTTTCCTA1037910.21574961595109118No Hit
GGCCAGGG725370.15078214770302148ABI Solid3 GAPDH Forward Primer (100% over 8bp)
GGACAGGA710350.1476599509503306No Hit
ACCAGTCA686420.14268563881371987No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)