FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007973366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007973366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49811710
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA1302678226.152047380023692No Hit
ACCAGTCC1290586925.909307269314784No Hit
CTTTCCTT1220702324.50633194483787No Hit
GGACAGGG1082914121.740151060865006No Hit
CTTTCCTA1053180.21143221142177213No Hit
GGACAGGA738040.14816596338491492No Hit
ACCAGTCA672270.13496224080642885No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)