FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007973374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007973374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65641446
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCAACA1639485824.976381537969168No Hit
GAGTGCGT1629445624.82342634560488No Hit
ACAACTTG1602310424.410041180384724No Hit
TGTGTGAC1528301823.282573634956183Illumina PCR Primer Index 5 (100% over 8bp)
TGTGTGCC1027040.15646212303123244No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)