FastQCFastQC Report
Mon 22 May 2023
EGAF00007973382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007973382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64828287
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCAACA1600451124.687542646314256No Hit
GAGTGCGT1592860224.57045024188284No Hit
ACAACTTG1567787724.183697773781994No Hit
TGTGTGAC1498609823.11660340493032Illumina PCR Primer Index 5 (100% over 8bp)
TGTGTGCC1568800.24199312870938575No Hit
CTCCCACA865580.13351887579568467No Hit
CTCCAAAA742190.11448551771852308No Hit
GAGTGCGA669200.10322654368454931No Hit
CACCAACA657140.10136624464564366No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)