FastQCFastQC Report
Sun 19 May 2024
EGAF00007981248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1783724
Total Bases15.6 Gbp
Sequences flagged as poor quality0
Sequence length5-222371
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATATGATTT57460.3221350388288771No Hit
AATCTCACATTATATTTATTATAATAAATCATCGTAGATATACACAATGT39700.22256806546304247No Hit
ATAATCTCACATTATATTTATTATAATAAATCATCGTAGATATACACAAT34300.19229432356126844No Hit
ATATCTACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATA26780.15013533483879793No Hit
AATTCACATTGTGTATATCTACGATGATTTATTATAATAAATATAATGTG25620.14363208657841683No Hit
CACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATATGATT19620.1099945955764457No Hit
AATCATCGTAGATATACACAATGTGAATTGTATACAATGGATAGTATAAC17900.10035184815588062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)