FastQCFastQC Report
Thu 23 May 2024
EGAF00007981249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1019983
Total Bases9.6 Gbp
Sequences flagged as poor quality0
Sequence length3-227337
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATATGATTT15570.15264960298357913No Hit
AATTCACATTGTGTATATCTACGATGATTTATTATAATAAATATAATGTG12380.12137457192913999No Hit
AATCTCACATTATATTTATTATAATAAATCATCGTAGATATACACAATGT12360.12117849022973912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)