FastQCFastQC Report
Sat 25 May 2024
EGAF00007981251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1459482
Total Bases13.1 Gbp
Sequences flagged as poor quality0
Sequence length7-213221
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATATGATTT33750.23124642852738164No Hit
AATCTCACATTATATTTATTATAATAAATCATCGTAGATATACACAATGT21380.14649033013082724No Hit
ATAATCTCACATTATATTTATTATAATAAATCATCGTAGATATACACAAT18530.12696285394407059No Hit
AATTCACATTGTGTATATCTACGATGATTTATTATAATAAATATAATGTG15880.10880572696340207No Hit
ATATCTACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATA15190.10407802220239784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)