FastQCFastQC Report
Sat 25 May 2024
EGAF00007981252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1181655
Total Bases10.6 Gbp
Sequences flagged as poor quality0
Sequence length1-291700
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATATGATTT19710.1667999543013824No Hit
AGATATACACAATGTGAATTGTATACAATGGATAGTATAACTATCCAATT14900.12609433379455087No Hit
AATCTCACATTATATTTATTATAATAAATCATCGTAGATATACACAATGT11900.10070621289631915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)