FastQCFastQC Report
Wed 22 May 2024
EGAF00007981254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1343902
Total Bases11.4 Gbp
Sequences flagged as poor quality0
Sequence length3-265647
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATATGATTT22620.16831584445889655No Hit
AGATATACACAATGTGAATTGTATACAATGGATAGTATAACTATCCAATT14460.10759713133844581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)