FastQCFastQC Report
Sat 25 May 2024
EGAF00007981255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences967587
Total Bases9.9 Gbp
Sequences flagged as poor quality0
Sequence length2-303406
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATATGATTT18140.18747668168340417No Hit
AGATATACACAATGTGAATTGTATACAATGGATAGTATAACTATCCAATT12890.133217994867645No Hit
AATCTCACATTATATTTATTATAATAAATCATCGTAGATATACACAATGT12410.12825720064448984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)