FastQCFastQC Report
Sun 19 May 2024
EGAF00007981260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1583579
Total Bases15.3 Gbp
Sequences flagged as poor quality0
Sequence length4-145991
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATATGATTT80950.511183843685727No Hit
AATCTCACATTATATTTATTATAATAAATCATCGTAGATATACACAATGT52740.3330430625816584No Hit
ATAATCTCACATTATATTTATTATAATAAATCATCGTAGATATACACAAT48650.30721549098592493No Hit
AATCATCGTAGATATACACAATGTGAATTGTATACAATGGATAGTATAAC47020.2969223512057182No Hit
AATTCACATTGTGTATATCTACGATGATTTATTATAATAAATATAATGTG44520.28113532700294713No Hit
ATATCTACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATA41920.2647168218320652No Hit
AATGTGAATTGTATACAATGGATAGTATAACTATCCAATTTCTTTGAGCA41350.2611173803138334No Hit
AAATCATCGTAGATATACACAATGTGAATTGTATACAATGGATAGTATAA37890.23926813881719827No Hit
AATGGATAGTATAACTATCCAATTTCTTTGAGCATTGGCCTTGGTGTAGA32890.20769409041165612No Hit
ATACAATTCACATTGTGTATATCTACGATGATTTATTATAATAAATATAA26740.1688580108728393No Hit
CACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATATGATT25270.15957524064160994No Hit
ACAATTCACATTGTGTATATCTACGATGATTTATTATAATAAATATAATG25000.15787024202771066No Hit
AATTGTATACAATGGATAGTATAACTATCCAATTTCTTTGAGCATTGGCC24520.1548391333807786No Hit
ATACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATATGAT22770.14378821643883888No Hit
AGATATACACAATGTGAATTGTATACAATGGATAGTATAACTATCCAATT22520.14220951401856174No Hit
ATAAATCATCGTAGATATACACAATGTGAATTGTATACAATGGATAGTAT16930.10690972790116564No Hit
AATGTGAATTGTATACAATGGATAGTATAACTATCAATTTCTTTGAGCAT16640.1050784330936442No Hit
ATCTACGATGATTTATTATAATAAATATAATGTGAGATTATGCATATATG16440.10381547115742253No Hit
ATTATATTTATTATAATAAATCATCGTAGATATACACAATGTGAATTGTA16430.10375232306061144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)