FastQCFastQC Report
Mon 13 May 2024
EGAF00007981289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10291064
Total Bases22 Gbp
Sequences flagged as poor quality0
Sequence length56-124159
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGTACTTCGTTCAGTTACGTATTGCTCATAGCTAATTGTGGATGTAT262400.2549784939633064No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTGATAGTATACATAGCTAATTG161680.15710717570117141No Hit
GTTGTACTTCGTTCAGTTACGTATTGCTCATAGCTAATTGTGGATGTATA146190.1420552821360357No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTCTATCTATAGAGATGGTGCAT123490.11999731028783807No Hit
CATTGTACTTCGTTCAGTTACGTATTGCTATATGTAGAATATCACATTAT115010.11175715164146294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)