FastQCFastQC Report
Wed 22 May 2024
EGAF00007981331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2131219
Total Bases8.8 Gbp
Sequences flagged as poor quality0
Sequence length33-288515
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG131540.6172054584723579No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT54020.2534699624956422No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30130.14137449037381894No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)