FastQCFastQC Report
Tue 14 May 2024
EGAF00007981332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1205438
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length68-409214
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA71640.5943067996860892No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG55220.4580907520751793No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27720.2299579074162255No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT22600.18748371961063115No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15880.1317363481157886No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)