FastQCFastQC Report
Wed 15 May 2024
EGAF00007981334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007981334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1491067
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length26-1076344
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA84370.5658364111069456No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG52800.35410883615558525No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38440.2578019632920587No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT21060.14124113805751184No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18370.12320036591246403No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)